Shaurita's Projects
Below are some selected projects that I have worked on. View more of my GitHub projects.
FLASK-DEMO
flask-demo is a demo of a website built with the Flask framework that includes a dummy login page.
GBS-GUIDE
An unofficial guide for students entering the Graduate Biomedical Sciences (GBS) doctoral program at UAB.
HTSEQ-COUNT-CLUSTER
htseq-count-cluster is a CLI for running multiple qsub jobs with HTSeq's htseq-count script on a SGE/SGI cluster.
LABRAT
labrat is a basic science lab framework aimed at reproducibility and lab management.
MICROBIOMER
MicrobiomeR is an R package for microbiome analysis that incorporates phyloseq, metacoder, taxa, and microbiome in order to standardize and simplify common microbiome workflows.
ORTHOEVOLUTION
OrthoEvolution is an easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes.
BERI
beRi is an R environment, R installation, and R package management system for the R programming language.
OPENOMICS
A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.